miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|48482745|gb|CN990855.1|CN990855 CCGAAGTATGAGATCGGCACGAGGCGCACCCACCTGGAGCCGGTGGTCAAGGAGCACTACGCCAGGCACAACGCCGAGAT
GGAGGCTCTGAGGGCCAAGCTGGAGCCCGTCATGGAGGAGCTGCGCCAGAAGGTCGCCACCAACGTGGAGGAGACCAAAG
CGGCCCTCATGCCCATCGTGGAGTCCGTGCGCGCCAAGCTCACCGAGCGCCTGGAGACCCTGAGGGCGGCGGCGGCCCCT
CACGTGGAGGAGTACAAACAGCAGATGATGCAGCTCTACAACCAGGCGCATGGCGTCAACGCCGAGGAGCTCACCGCCCT
GAAGGAGAAGCTGGCTCCGCTGGCAGAGGACATTAGGGCCAAGCTCGCCGCCATGGTCGGCGTCATCACCGAAACCTTCA
ACAAAAACTAAATCCTCTCTTTCCCTCCCTTTAACTAACCTCGCCTTCCAGGCTGATCCATCTAAGCTGTCTCTTATGCT
CTTTCTACCCCCTCCCCACCCCCCGCCTCCCTCCCACAAACAGACCACCTCAGAAGTGAAGCTGGTGCCTAACTTATGAA
CGAACATGGCGGAACTTCCTCTCCTCCGAGCACACACGCAAGCACGCGCACAGAGGCACATCCACACTCAACACACACAC
ACATACACACGCCAGCGCGCCTTTGTCTTTTCATGCCATCTGCTAACATGTTGTGTATGAGTTGTGTGTGATTGCCACAC
AGCTTGATCTCTGTGTATAATGTACTGTGCTTGATGAAAGAATACAGCTCATAACATCTGACTGTATAAACAGAAAACAG
ACAAAAAGAAACGTGGAGAGTATACTTGACAATTACCCCCACGCGCCACAG




Most similar to sp|O42175|APOA1_SPAAU

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LVC9|RLA32_ARATH 60S acidic ribosomal protein P3-2
           OS=Arabidopsis thaliana GN=RPP3B PE=1 SV=1
          Length = 120

 Score = 79.3 bits (194), Expect(2) = 7e-23
 Identities = 37/38 (97%), Positives = 37/38 (97%)
 Frame = +3

Query: 60  MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRXL 173
           MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQR L
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKL 38



 Score = 47.4 bits (111), Expect(2) = 7e-23
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +2

Query: 173 VQTALSADSSGGVQSSFSLVSPTS 244
           VQTALSADSSGGVQSSFSLVSPTS
Sbjct: 39  VQTALSADSSGGVQSSFSLVSPTS 62


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O42175|APOA1_SPAAU Apolipoprotein A-I OS=Sparus aurata GN=apoa1
           PE=2 SV=1
          Length = 260

 Score =  130 bits (327), Expect = 1e-29
 Identities = 64/128 (50%), Positives = 92/128 (71%)
 Frame = +1

Query: 25  RTHLEPVVKEHYARHNAEMEALRAKLEPVMEELRQKVATNVEETKAALMPIVESVRAKLT 204
           RT L P+  ++  +H+ EM AL+ +LEPVMEELR K+  NVEETKA LMP+VE+VR K+T
Sbjct: 136 RTLLTPIYNDYKTKHDEEMAALKTRLEPVMEELRTKIQANVEETKAVLMPMVETVRTKVT 195

Query: 205 ERLETLRAAAAPHVEEYKQQMMQLYNQAHGVNAEELTALKEKLAPLAEDIRAKLAAMVGV 384
           ERLE+LR    P+V+EYK+QM Q+Y+QA  V+ +   AL+ K+ PL E+I+ K+ A+  +
Sbjct: 196 ERLESLREVVQPYVQEYKEQMKQMYDQAQTVDTD---ALRTKITPLVEEIKVKMNAIFEI 252

Query: 385 ITETFNKN 408
           I  +  K+
Sbjct: 253 IAASVTKS 260